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Follows #19266, #8553, Close#18553, now there are only three `Run..(&RunOpts{})` functions.
* before: `stdout, err := RunInDir(path)`
* now: `stdout, _, err := RunStdString(&git.RunOpts{Dir:path})`
This PR continues the work in #17125 by progressively ensuring that git
commands run within the request context.
This now means that the if there is a git repo already open in the context it will be used instead of reopening it.
Signed-off-by: Andrew Thornton <art27@cantab.net>