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The diff context is just big enough to see what happens.
RPMTAG_FILESIZES are interpreted as signed integers, and st_size which
has type off_t is also signed. So the 32-bit file size form the header
gets sign-extended, after which the equality to st_size does not hold.
To check the dependencies of an installed package, a "transaction" is
created, and the package is added to the transaction. The transaction
is then checked with rpmdepCheck(). However, since the installed
package has not been marked for removal, a conflict can be triggered
between the installed and that of transaction copies of the package.
The right thing to do is to mark package for removal, re-add it to
the transaction, and then to check the dependencies.